Pumpkin Cream Cheese Muffins

Prep Time 12 minutes
Cook Time 18 minutes
Total Time 30 minutes
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These are the original swirled pumpkin cream cheese muffins with sweet cream cheese that melts into the tops of moist pumpkin muffins as they bake. Ready in just 30 minutes, make a double batch because these muffins are guaranteed to be a new family favorite!

Moist swirled pumpkin cream cheese muffins arranged on a wood board.

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Why I Love These Pumpkin Cheesecake Muffins

Don’t worry, while I did update the photos, this is still the original recipe that went viral and made everyone start swirling cream cheese into the tops of their pumpkin muffins! I make these bad boys every. Single. Year. I don’t think my kids (or Jorge) would forgive me if I didn’t make at least one batch in the fall. Judging by the amount of glowing reviews these pumpkin cream cheese muffins have received over the years, I think it’s safe to say they’ve become a tradition in many homes, and here’s why:

  • Impressive: If you are looking for a touch of sophistication, these swirled beauties are sure to impress with thick ribbons of cream cheese that melt right into the top of the pumpkin muffins as they bake.
  • Quick and Easy: These muffins come together in just 30 minutes using budget-friendly pantry staples you likely already have on hand.
  • Extra Moist: These pumpkin cream cheese muffins are pure melt-in-your-mouth goodness. Just like my pumpkin bread recipe, they use an entire can of pumpkin to keep them moist, with no leftover pumpkin to worry about.
  • Crowd-Pleaser: You might want to make a double batch, because these pumpkin cheesecake muffins disappear FAST!

If you love pumpkin as much as I do make sure to also check out my cinnamon-sugar donut pumpkin muffins, sweet pumpkin streusel muffins or these pumpkin oatmeal muffins.

Ingredients for pumpkin cream cheese muffin recipe in bowls in order from top to bottom: all purpose flour, pumpkin puree, sugar, eggs, vegetable oil, pumpkin spice, vanilla extract, salt, baking soda, brown sugar, cream cheese, egg yolk.

Key Ingredients

Below you will find helpful notes for key ingredients used to make this recipe for cream cheese pumpkin muffins. Scroll down to the recipe card below for the full ingredient list and exact amounts!

  • Flour: All-purpose flour works best! Be sure to fluff the flour, then measure it by spooning it into a measuring cup. Don’t dip the cup straight into a packed bag of flour, or you will make overly dense muffins!
  • Pumpkin Puree: I use a 15 oz can of pumpkin. Make sure it is pure pumpkin puree, not pumpkin pie filling which is already sweetened.
  • Sugar: I use a combination of granulated sugar and light brown sugar for the best consistency and sweetness, but you can use just one kind of sugar if you prefer.
  • Vegetable Oil: For an extra-moist muffin I recommend using oil, however you can use melted and slightly cooled butter instead.
  • Cream Cheese: Use full-fat cream cheese (not low fat) for the best taste and texture.
  • Egg Yolk: This is used for richness and to help with the texture of the cream cheese swirl.
  • Pumpkin Spice: To make your own, combine 4 tsp cinnamon, 2 tsp ginger, 1 tsp cloves, 1/2 tsp nutmeg and 1/2 tsp allspice. If you donโ€™t have all the ingredients on hand, you can also use just cinnamon and a pinch of nutmeg instead!
Pumpkin muffin with cream cheese on a plate with the muffin liner pulled off.

How to Make Pumpkin Cream Cheese Muffins

I like to have everything I need measured and ready to go before I start baking! Below is a quick recipe overview, but please scroll to the recipe card at the bottom of this post for full instructions and to watch the step-by-step video.

  • Dry Ingredients: Whisk together the dry ingredients: flour, pumpkin spice, baking soda and salt.
  • Wet Ingredients: Whisk to combine the pumpkin, sugar and brown sugar. Beat in eggs, vegetable oil and vanilla extract.
  • Combine: Slowly whisk the flour mixture into the pumpkin mixture, until there are no lumps. Do not over stir, just until the batter comes together. Fill paper-lined muffin tins 3/4ths of the way full.
  • Cream Cheese Mixture: In a medium bowl, beat cream cheese until smooth. Add in sugar, egg yolk and vanilla extract and beat until well combined.
  • Swirl: Top each muffin with about 1 tablespoon of the cream cheese mixture and use a toothpick to swirl it into the batter. You can also just drop it by rounded spoonfuls to the centers of the muffin batter, swirling is optional!
  • Bake: Bake muffins for 18 to 20 minutes, or until a toothpick inserted in the pumpkin party comes out mostly clean with just a few moist crumbs stuck to it.

Chef’s Tips & Variations

  • Caution: Don’t overfill cups with muffin batter as the cream cheese dollop will make up some of the volume.
  • Room Temperature Ingredients: It’s important for the eggs and cream cheese to be at room temperature so they combine smoothly and the cream cheese mixture swirls easily into the top of the muffins. To speed up the process, eggs can rest in a bowl of warm water and cream cheese can be cut into small cubes.
  • Don’t Over-Mix: Combine the dry ingredients with the wet ingredients gently, just until combined. If you over stir the batter, it can overdevelop the gluten and cause dry muffins.
  • Dollop: Don’t have time to swirl the cream cheese into the top of each muffin? Try adding a dollop of the cream cheese filling to the center of the batter instead.
  • Add Nuts: You can stir chopped pecans or walnuts into the muffing batter or sprinkle the tops with pepita seeds, also known as pumpkin seeds.
  • Bake A Loaf: If you would prefer to bake a loaf of bread instead of muffins, head over to my pumpkin cream cheese bread. It’s the same recipe, but baked into a loaf!
Pumpkin cream cheese muffin swirled with cream cheese on top.
4.5 from 2037 votes
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Yield: 18 standard muffins

Best Swirled Pumpkin Cream Cheese Muffins

⭐️Test Kitchen Approved!⭐️
These decadent swirled pumpkin cream cheese muffins are topped with sweet cream cheese that melts into the tops of the pumpkin muffins as they bake. Ready in just 30 minutes, this moist pumpkin muffin recipe will be a new family favorite!
Prep Time12 minutes
Cook Time18 minutes
Total Time30 minutes

Ingredients

Muffin:

  • 1 ยพ cups all purpose flour
  • 1 tablespoon pumpkin spice
  • 1 teaspoon baking soda
  • ยฝ teaspoon salt
  • 1 (15 oz) can pumpkin puree
  • 1 cup granulated sugar
  • ยฝ cup packed brown sugar
  • 2 large eggs
  • ยฝ cup vegetable oil, or melted and cooled butter
  • 1 tablespoon vanilla extract

Cream Cheese Swirl:

  • 8 oz cream cheese, room temperature
  • ยผ cup granulated sugar
  • 1 large egg yolk, room temperature
  • 2 teaspoons vanilla extract

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Instructions 

  • Preheat oven to 375ยฐF. Place paper baking cups into muffin pan. Set aside.
  • In a medium bowl, whisk flour, pumpkin spice, baking soda and salt until well combined. Set aside.
  • In large bowl, whisk together pumpkin, sugar and brown sugar. Beat in eggs, vegetable oil and vanilla extract. Slowly whisk in the flour mixture, until there are no lumps. Fill muffin tins 3/4 full.
  • In a medium bowl, beat cream cheese until smooth. Add in sugar, egg yolk and vanilla extract and beat until well combined.
  • Top each muffin with about 1 tablespoon of cream cheese mixtureย and use a toothpick to swirl it into the batter. This will not look smooth, but it will bake up much prettier. You can see exactly how I did this in the video below. You can also just drop it by rounded spoonfuls to the centers of the muffin batter, swirling is optional!
  • Bake muffins for 18 to 20 minutes, or until a toothpick inserted in the pumpkin part comes out clean with just a few moist crumbs stuck to it. Let cool for 10 minutes, then serve warm or let cool completely to store.

Video

Notes

Storage: Store these pumpkin cream cheese swirl muffins in the refrigerator in an airtight container for up to 5 days. I personally like these muffins best served at room temperature or slightly chilled, so I take them out of the fridge for a few minutes before serving to allow them to warm up.
No Pumpkin Spice? Make your own by combining 4 tsp cinnamon, 2 tsp ginger, 1 tsp cloves, 1/2 tsp nutmeg and 1/2 tsp allspice.
Bake A Loaf: If you would prefer to bake a loaf of bread instead of muffins, head over to my pumpkin cream cheese bread. Itโ€™s the same recipe, but baked into a loaf!
Donโ€™t Over-Mix: Combine the dry ingredients with the wet ingredients gently, just until combined. If you over stir the batter, it can overdevelop the gluten and cause dry muffins.

Nutrition

Serving: 1 muffin, Calories: 241kcal, Carbohydrates: 32g, Protein: 3g, Fat: 11g, Saturated Fat: 4g, Polyunsaturated Fat: 4g, Monounsaturated Fat: 3g, Trans Fat: 0.04g, Cholesterol: 42mg, Sodium: 176mg, Potassium: 98mg, Fiber: 1g, Sugar: 21g, Vitamin A: 3888IU, Vitamin C: 1mg, Calcium: 32mg, Iron: 1mg

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5 stars
Fantastic recipe. I made these for my staff meeting, but my family got to them first, so I had to make another batch. Everyone raved, saying these were the best pumpkin muffins they’d ever had.
I did add some turbinado sugar to them at the end of baking. Super yum.

5 stars
So so so good !!! It’s also the pumpkin season here in Quรฉbec, Canada and what an incredible recipe to pass the pumkin purรฉe.
The cream cheese swirl is perfect ! I made some adjustments : 1/2 cup of white sugar instead of one, light version of cream cheese and melted coconut oil instead of vegetable oil. I added some pepitas on top and it was fabulous. My boyfriend love them so much !! Thanks again for this recipe, it’s definetly a keeper !!!!

5 stars
I made these today for the first time and they are dangerously delicious! Great fall recipe.

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How long for mini muffins?

4 stars
My muffins kept deflating! I even baked them longer as well and they still flattened. Not sure what I did wrong. Flavor is good, toothpick came out clean, but they are super soft/a bit gooey inside.

20241006_155653

5 stars
This is the absolute best muffin I have ever made! And I make a ton of muffins. My husband and children devoured these. I shared them with my friends and all of them have asked for the recipe. They are so moist, flavorful, and delicious

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5 stars
These are dense, moist, delicious! Will try a crumble topping next!

5 stars
This recipe is definitely a keeper. Absolutely delicious my family loves them. Thank you for sharing.

4 stars
Hi!! I did this exact recipe to a T. However I used Olive oil & lactose free original cream cheese. They did not turn out good at allโ€ฆ. Next time i plan on using veg oil & just regular cream cheese. Do you think the cream cheese & olive oil would of effected the baking!?

5 stars
I used canola oil and they turned out delicious.

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5 stars
I am going to try these with a brown sugar streusel toppingโ€ฆ

5 stars
these muffins ARE SO GOOD. best pumpkin muffins iโ€™ve had. i am going to try and make a healthy oat breakfast pumpkin muffin out of this recipe. hoping it works out bc these are delicious.

5 stars
Would almond extract be good in the cream cheese mixture? Went to make the cream cheese mixture and realized I only had about 1/2 tsp of vanilla extract left and almond is the only other extract I have

Can I freeze these?

We LOVE sweetened cream cheese and wondered if doubling the amount would work? Might need less pumpkin batter and more muffin cups. But would the cook time change? Maybe try it in a loaf pan first?

5 stars
This recipe is a keeper. So moist. I will be making these again.

These are delicious! They’re so moist, and it’s a pumpkin pie! So good!

5 stars
We absolutely loved these muffins! Perfect cream cheese to muffin ratio and the muffin itself wasn’t dry. Added this recipe to my book to make again! Thanks for the recipe!

5 stars
Made these this morning. Astounding. Having difficulty resisting a second muffin before they even cool down.

5 stars
Except for not being able to freeze these….they’re ABSOLUTELY perfect! Thanks for the fabulous recipe from this “non- baker”!

5 stars
This recipe is the best!! I made it a ton of times now. Definitely try this recipe, my family and friends all loves it!

5 stars
In my earlier comment, I forgot to mention that I use half apple sauce, half oil. I’ve also made these using full oil, and personally can’t tell the difference. And no complaints from anyone else I’ve shared with. Thanks again!

5 stars
I’ve been making this since 2018 or 2019 (can’t remember), and they’re delicious.

I usually double the recipe and bake it in a rectangular 9ร—13 pyrex glass dish for about an hour–sometimes a minute or two more. I always check doneness first, and adjust my time accordingly. Also cover the top with foil about halfway through baking to keep it from getting overly brown/burnt.

Perfect, thank you!

5 stars
If youโ€™re searching for a recipe, your search ends here. These are SO good!!

I added a dash of maple extract to the batter, which was delicious. And I used brown sugar for cream cheese mixture (I ran out of white sugar). These were a hit! Will definitely be making again

Thank You For Being Here!

Jessica
For the past 15 years, Jorge & Jessica have loved getting to share their families' favorite recipes with all of you. They live in Florida with their 3 kids.